3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08202

Details:

PFam ID : PF08202

PFam Domain Description : Mis12-Mtw1 protein family

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 87

Average sequence length: 271.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08202	Q4P6C5_USTMA_505_861	78.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08202	E6R9V3_CRYGW_235_503	95.3

Sequence based PCA Plot of the family - PF08202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay