3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08200

Details:

PFam ID : PF08200

PFam Domain Description : Bacteriophage 1.1 Protein

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 11

Average sequence length: 37.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08200	Q9YR02_9VIRU_1_47	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08200	Q6WYR6_BPT7_1_40	90

Sequence based PCA Plot of the family - PF08200 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay