3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08198

Details:

PFam ID : PF08198

PFam Domain Description : Thymopoietin protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 16

Average sequence length: 45.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08198	Q9YR02_9VIRU_1_47	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08198	D2V886_NAEGR_15_61	100

Sequence based PCA Plot of the family - PF08198 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay