3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08190

Details:

PFam ID : PF08190

PFam Domain Description : pre-RNA processing PIH1/Nop17

Number of Sequence in 50% Dataset : 186

Number of Sequence in Full Dataset : 327

Average sequence length: 214.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08190	B4QN58_DROSI_90_149	67.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08190	Q7Q1D6_ANOGA_4_153	96.9

Sequence based PCA Plot of the family - PF08190 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=123 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay