3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08189

Details:

PFam ID : PF08189

PFam Domain Description : Meleagrin/Cygnin family

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 5

Average sequence length: 31

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08189	MELG_MELGA_1_39	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08189	MELG_MELGA_1_39	100

Sequence based PCA Plot of the family - PF08189 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=11
Motif2 Start=28 Length=8
Motif3 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay