3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08186

Details:

PFam ID : PF08186

PFam Domain Description : Wound-inducible basic protein family

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 11

Average sequence length: 41.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08186	E4PSZ9_MYCLG_454_510	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08186	B9GCT1_ORYSJ_1_31	90

Sequence based PCA Plot of the family - PF08186 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay