3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08181

Details:

PFam ID : PF08181

PFam Domain Description : DegQ (SacQ) family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 4

Average sequence length: 34.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08181	E4PSZ9_MYCLG_454_510	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08181	DEGQ_BACLI_1_46	100

Sequence based PCA Plot of the family - PF08181 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay