3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08173

Details:

PFam ID : PF08173

PFam Domain Description : Membrane bound YbgT-like protein

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 110

Average sequence length: 27.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08173	C6YN72_FRATT_1_28	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08173	C6YN72_FRATT_1_28	100

Sequence based PCA Plot of the family - PF08173 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay