3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08172

Details:

PFam ID : PF08172

PFam Domain Description : CASP C terminal

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 110

Average sequence length: 223

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08172	D8LDY2_ECTSI_386_681	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08172	Q5BS24_SCHJA_1_106	100

Sequence based PCA Plot of the family - PF08172 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay