3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08168

Details:

PFam ID : PF08168

PFam Domain Description : NUC205 domain

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 14

Average sequence length: 40.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08168	C1G254_PARBD_26_204	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08168	Q29DG2_DROPS_97_140	53

Sequence based PCA Plot of the family - PF08168 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay