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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08166
Details:

PFam ID : PF08166

PFam Domain Description : NUC202 domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 13

Average sequence length: 63.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08166B3S2V0_TRIAD_615_674No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF08166C3XZR5_BRAFL_613_68090.3
Sequence based PCA Plot of the family - PF08166 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=22 Length=17
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay