3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08164

Details:

PFam ID : PF08164

PFam Domain Description : Apoptosis-antagonizing transcription factor, C-terminal

Number of Sequence in 50% Dataset : 19

Number of Sequence in Full Dataset : 120

Average sequence length: 80.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08164	B9Q9C6_TOXGO_1242_1333	44.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08164	B9Q9C6_TOXGO_1242_1333	100

Sequence based PCA Plot of the family - PF08164 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay