3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08163

Details:

PFam ID : PF08163

PFam Domain Description : NUC194 domain

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 47

Average sequence length: 325.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08163	E7LI52_TRYCR_1791_2171	76.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08163	A9VDE0_MONBE_1306_1738	100

Sequence based PCA Plot of the family - PF08163 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=343 Length=8
Motif4 Start=275 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay