3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08161

Details:

PFam ID : PF08161

PFam Domain Description : NUC173 domain

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 143

Average sequence length: 182.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08161	A8Q5X1_BRUMA_541_594	85.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08161	Q00V44_OSTTA_416_638	100

Sequence based PCA Plot of the family - PF08161 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=200 Length=8
Motif3 Start=122 Length=8
Motif4 Start=159 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay