3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08159

Details:

PFam ID : PF08159

PFam Domain Description : NUC153 domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 214

Average sequence length: 29.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08159	Q23D79_TETTH_627_656	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08159	C4PET1_9SOLN_24_47	100

Sequence based PCA Plot of the family - PF08159 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=11
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay