3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08158

Details:

PFam ID : PF08158

PFam Domain Description : NUC130/3NT domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 119

Average sequence length: 50.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08158	F0X4Y4_CRYPV_59_112	58.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08158	Q57ZU2_9TRYP_58_110	100

Sequence based PCA Plot of the family - PF08158 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=42 Length=8
Motif2 Start=3 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay