3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08156

Details:

PFam ID : PF08156

PFam Domain Description : NOP5NT (NUC127) domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 253

Average sequence length: 64.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08156	C4QBN8_SCHMA_6_63	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08156	Q5BXS1_SCHJA_1_71	100

Sequence based PCA Plot of the family - PF08156 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=42

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay