3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08155

Details:

PFam ID : PF08155

PFam Domain Description : NOGCT (NUC087) domain

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 115

Average sequence length: 52.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08155	A6SK49_BOTFB_35_89	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08155	C4Q2R5_SCHMA_432_486	100

Sequence based PCA Plot of the family - PF08155 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=6 Length=8
Motif3 Start=46 Length=8
Motif4 Start=33 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay