3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08154

Details:

PFam ID : PF08154

PFam Domain Description : NLE (NUC135) domain

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 261

Average sequence length: 64.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08154	A6SK49_BOTFB_35_89	19.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08154	B8PHB8_POSPM_30_81	100

Sequence based PCA Plot of the family - PF08154 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay