3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08153

Details:

PFam ID : PF08153

PFam Domain Description : NGP1NT (NUC091) domain

Number of Sequence in 50% Dataset : 22

Number of Sequence in Full Dataset : 138

Average sequence length: 126.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08153	C5LN88_9ALVE_43_115	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08153	F0YIE6_9STRA_52_200	100

Sequence based PCA Plot of the family - PF08153 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=3 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay