3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08152

Details:

PFam ID : PF08152

PFam Domain Description : GUCT (NUC152) domain

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 81

Average sequence length: 96.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08152	A0E5L3_PARTE_456_535	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08152	F0VMK9_NEOCA_625_748	100

Sequence based PCA Plot of the family - PF08152 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay