3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08149

Details:

PFam ID : PF08149

PFam Domain Description : BING4CT (NUC141) domain

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 130

Average sequence length: 77.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08149	A0DIS3_PARTE_307_385	11.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08149	A0DIS3_PARTE_307_385	98.4

Sequence based PCA Plot of the family - PF08149 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=51 Length=8
Motif2 Start=66 Length=8
Motif3 Start=1 Length=8
Motif4 Start=16 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay