3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08148

Details:

PFam ID : PF08148

PFam Domain Description : DSHCT (NUC185) domain

Number of Sequence in 50% Dataset : 79

Number of Sequence in Full Dataset : 469

Average sequence length: 172.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08148	Q4YEI1_PLABA_1_85	65.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08148	F2UZ79_ACTVI_802_986	100

Sequence based PCA Plot of the family - PF08148 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=17 Length=8
Motif2 Start=105 Length=18
Motif3 Start=84 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay