3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08147

Details:

PFam ID : PF08147

PFam Domain Description : DBP10CT (NUC160) domain

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 113

Average sequence length: 62.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08147	E2I8I3_TREME_623_683	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08147	F0YI69_9STRA_1214_1287	100

Sequence based PCA Plot of the family - PF08147 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=34 Length=8
Motif2 Start=16 Length=17
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay