3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08145

Details:

PFam ID : PF08145

PFam Domain Description : BOP1NT (NUC169) domain

Number of Sequence in 50% Dataset : 30

Number of Sequence in Full Dataset : 131

Average sequence length: 237.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08145	E5T2F8_TRISP_42_143	75.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08145	F0V9W4_NEOCA_550_814	100

Sequence based PCA Plot of the family - PF08145 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=164 Length=8
Motif2 Start=253 Length=11
Motif3 Start=176 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay