3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08144

Details:

PFam ID : PF08144

PFam Domain Description : CPL (NUC119) domain

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 120

Average sequence length: 138.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08144	B9HXE2_POPTR_479_593	68.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08144	F1KTZ3_ASCSU_536_692	100

Sequence based PCA Plot of the family - PF08144 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay