3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08143

Details:

PFam ID : PF08143

PFam Domain Description : CBFNT (NUC161) domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 36

Average sequence length: 63.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08143	C4V6S1_NOSCE_212_254	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08143	Q6NYU8_DANRE_1_70	94.2

Sequence based PCA Plot of the family - PF08143 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay