3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08142

Details:

PFam ID : PF08142

PFam Domain Description : AARP2CN (NUC121) domain

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 266

Average sequence length: 82.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08142	C4V6S1_NOSCE_212_254	81.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08142	B9Q9N8_TOXGO_236_334	100

Sequence based PCA Plot of the family - PF08142 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=1 Length=8
Motif3 Start=19 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay