3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08140

Details:

PFam ID : PF08140

PFam Domain Description : Crustacean cuticle protein repeat

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 57

Average sequence length: 38.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08140	A1YLD7_PORPE_202_226	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08140	A6YPV0_CALSI_196_233	98.2

Sequence based PCA Plot of the family - PF08140 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay