3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08136

Details:

PFam ID : PF08136

PFam Domain Description : 30S ribosomal protein subunit S22 family

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 12

Average sequence length: 39.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08136	B3ST95_9PAPI_3_46	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08136	E3G804_ENTCS_1_45	100

Sequence based PCA Plot of the family - PF08136 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay