3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08134

Details:

PFam ID : PF08134

PFam Domain Description : cIII protein family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 5

Average sequence length: 34.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08134	E0G5P3_ENTFA_1_33	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08134	D5C632_ENTCC_1_42	100

Sequence based PCA Plot of the family - PF08134 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay