3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08133

Details:

PFam ID : PF08133

PFam Domain Description : Anticodon nuclease activator family

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 20.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08133	E0G5P3_ENTFA_1_33	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08133	Q333H8_9CAUD_6_30	100

Sequence based PCA Plot of the family - PF08133 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay