3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08130

Details:

PFam ID : PF08130

PFam Domain Description : Type A lantibiotic family

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 5

Average sequence length: 43.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08130	E0G5P3_ENTFA_1_33	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08130	O54220_STAEP_1_56	100

Sequence based PCA Plot of the family - PF08130 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay