3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08129

Details:

PFam ID : PF08129

PFam Domain Description : Alpha/beta enterocin family

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 6

Average sequence length: 38.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08129	E0G5P3_ENTFA_1_33	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08129	Q1JV79_9LACT_1_54	100

Sequence based PCA Plot of the family - PF08129 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay