3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08125

Details:

PFam ID : PF08125

PFam Domain Description : Mannitol dehydrogenase C-terminal domain

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 962

Average sequence length: 231.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08125	C8SYL4_KLEPR_216_262	78.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08125	C9V541_BRUNE_1_154	100

Sequence based PCA Plot of the family - PF08125 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=20
Motif2 Start=142 Length=11
Motif3 Start=254 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay