3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08123

Details:

PFam ID : PF08123

PFam Domain Description : Histone methylation protein DOT1

Number of Sequence in 50% Dataset : 103

Number of Sequence in Full Dataset : 226

Average sequence length: 157.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08123	B6ILN7_CAEBR_4_144	93.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08123	E3MKI4_CAERE_145_369	100

Sequence based PCA Plot of the family - PF08123 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=8
Motif4 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay