3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08122

Details:

PFam ID : PF08122

PFam Domain Description : NADH-ubiquinone oxidoreductase B12 subunit family

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 92

Average sequence length: 56.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08122	A8QGR1_BRUMA_37_101	76.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08122	A8QGR1_BRUMA_37_101	100

Sequence based PCA Plot of the family - PF08122 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=20
Motif2 Start=28 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay