3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08118

Details:

PFam ID : PF08118

PFam Domain Description : Yeast mitochondrial distribution and morphology (MDM) proteins

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 113

Average sequence length: 342.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08118	A5DI60_PICGU_182_230	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08118	E7R804_PICAD_280_361	100

Sequence based PCA Plot of the family - PF08118 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay