3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08113

Details:

PFam ID : PF08113

PFam Domain Description : Cytochrome c oxidase subunit IIa family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 7

Average sequence length: 29.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08113	E6ZVM0_9BASI_280_473	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08113	Q72JK4_THET2_1_34	100

Sequence based PCA Plot of the family - PF08113 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay