3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08110

Details:

PFam ID : PF08110

PFam Domain Description : Ocellatin family

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 6

Average sequence length: 15.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08110	E6ZVM0_9BASI_280_473	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08110	OCE1_LEPOE_2_20	100

Sequence based PCA Plot of the family - PF08110 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay