3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08108

Details:

PFam ID : PF08108

PFam Domain Description : Halocidin family

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 7.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08108	E6ZVM0_9BASI_280_473	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08108	HLOA_HALAU_4_18	100

Sequence based PCA Plot of the family - PF08108 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay