3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08092

Details:

PFam ID : PF08092

PFam Domain Description : Magi peptide toxin family

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 17

Average sequence length: 37.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08092	JZT56_CHIJI_68_107	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08092	JZT56_CHIJI_68_107	100

Sequence based PCA Plot of the family - PF08092 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay