3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08090

Details:

PFam ID : PF08090

PFam Domain Description : Heat stable E.coli enterotoxin 1

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 3

Average sequence length: 24

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08090	CI1BE_CONRA_1_37	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08090	Q6BCH1_EDWIC_1_36	100

Sequence based PCA Plot of the family - PF08090 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=24 Length=11
Motif2 Start=1 Length=8
Motif3 Start=15 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay