3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08085

Details:

PFam ID : PF08085

PFam Domain Description : Entericidin EcnA/B family

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 184

Average sequence length: 20.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08085	A8TSI1_9PROT_24_44	8.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08085	B9XKK9_9BACT_23_43	100

Sequence based PCA Plot of the family - PF08085 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay