3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08077

Details:

PFam ID : PF08077

PFam Domain Description : Chloramphenicol resistance gene leader peptide

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 2

Average sequence length: 8.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08077	E0NMZ2_9FIRM_11_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08077	Q9EUB3_CORST_1_17	100

Sequence based PCA Plot of the family - PF08077 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay