3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08075

Details:

PFam ID : PF08075

PFam Domain Description : NOPS (NUC059) domain

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 53

Average sequence length: 49.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08075	A8Q9X0_BRUMA_3_27	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08075	E4YAA1_OIKDI_264_315	100

Sequence based PCA Plot of the family - PF08075 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=1 Length=8
Motif3 Start=11 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay