3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08074

Details:

PFam ID : PF08074

PFam Domain Description : CHDCT2 (NUC038) domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 35

Average sequence length: 124.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08074	C4Q0C0_SCHMA_1609_1787	10

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08074	C4Q0C0_SCHMA_1609_1787	100

Sequence based PCA Plot of the family - PF08074 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=39 Length=8
Motif2 Start=30 Length=8
Motif3 Start=21 Length=8
Motif4 Start=6 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay