3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08068

Details:

PFam ID : PF08068

PFam Domain Description : DKCLD (NUC011) domain

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 189

Average sequence length: 50.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08068	A0B9U4_METTP_1_43	71.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08068	A0B9U4_METTP_1_43	97.3

Sequence based PCA Plot of the family - PF08068 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=9 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay