3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08060

Details:

PFam ID : PF08060

PFam Domain Description : NOSIC (NUC001) domain

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 334

Average sequence length: 51.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08060	D7LA89_ARALL_89_127	23.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08060	C4Y1H4_CLAL4_116_168	94.5

Sequence based PCA Plot of the family - PF08060 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=24 Length=27
Motif2 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay