3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08058

Details:

PFam ID : PF08058

PFam Domain Description : Nuclear pore complex component

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 57

Average sequence length: 123.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08058	B6K3U0_SCHJY_170_249	92

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08058	C5DRQ7_ZYGRC_87_256	100

Sequence based PCA Plot of the family - PF08058 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=124 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay